GGGenome Help | English

データベース：
 

ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2025-04-03 09:01:03, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

Pipistrellus pipistrellus genome assembly, chromosome: 6.
LR862362.1:80222599-80222616
ATGCCCCAAACTATAAAACAGGGATCCCAT80222599GCACTTTGCTCATTGGTACTTCTTATTCAATGGGTGATGTGGTGGTGG
RS3G573TF RS3(RT) Raphanus sativus cDNA 5', mRNA sequence.
FD955162.1:459-476
GTACCAACCTGAGGAACAAATGCCCTTCCT459GCACTTTGCTCATTGGTATCCACCGATGCAGAATCATGGAGAGAGTTG
Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrH039L17, *** SEQUENCING IN PROGRESS ***, 4 ordered pieces.
AC241126.1:38884-38901
AGCTGTCTAGTGGTAGTGTTATATATTTTA38884GCACTTTGCTCATTGGTAAAGCACATCAAACCGTGAAAAACTTGAGAG
Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrH039L17, *** SEQUENCING IN PROGRESS ***, 4 ordered pieces.
AC241126.1:53139-53156
AGCTGTCTAGTGGTAGTATTATATATTTGA53139GCACTTTGCTCATTGGTAAAGCACATCAAACCGTGAAAAATTTGAGAG
Quercus dentata isolate Qdleaves-2020 chromosome 4.
CP116447.1:88038170-88038187
ATAGTTCTTCAAACTCCTTAAGTAATGGTT88038170GCACTTTGCTCATTGGTATTTAGAGCCTTCGCTTTGGAACAACCATTA
Hordeum vulgare subsp. spontaneum genome assembly, chromosome: 6H.
OX460045.1:415870304-415870321
AGGAACCACTAGACGGTTCTGAAAGAACAC415870304GCACTTTGCTCATTGGTAGAGAAACCCCTAGCGTTTCCGCTAGCAATA
Hordeum vulgare subsp. spontaneum genome assembly, chromosome: 6H.
OX460094.1:420352229-420352246
AGGAACCACTAGACGGTTCTGAAAGAACAC420352229GCACTTTGCTCATTGGTAGAGAAACCCCTAGCGTTTCCGCTAGCAATA
Hordeum vulgare genome assembly, chromosome: 6H.
OX460136.1:423388393-423388410
AGGAACCACTAGACGGTTCTGAAAGAACAC423388393GCACTTTGCTCATTGGTAGAGAAACCCCTAGCGTTTCCGCTAGCAATA
Euphorbia lathyris genome assembly, chromosome: 1.
OY755220.1:82106510-82106527
AATCATGATATCCTAGTTTGATATTGGTAA82106510GCACTTTGCTCATTGGTAAGAACTATATTTCCTGGAAAAGATTGATGT
Reichenbachiella sp. BKB1-1 chromosome, complete genome.
CP106679.1:4365889-4365906
GCCCTGAGACCTTGGCCATGGATTATCGTG4365889GCACTTTGCTCATTGGTAGTATTCCCAGATTTGGACAGTTTCCTTGTG
Tinea trinotella genome assembly, chromosome: 17.
HG992322.1:9092928-9092945
TTTATTGGATGCCACCGGCCAGTATCCTTG9092928GCACTTTGCTCATTGGTACCGATTTGGTATTATAACCGATTTTTATTT
Tinea semifulvella genome assembly, chromosome: 4.
OU342588.1:6634914-6634931
TTCAACGTGGCAATGCTGCCAGTATCCTTG6634914GCACTTTGCTCATTGGTAGCGATTTGGAGCAATTTTTTTATTTATAAT
Tinea semifulvella genome assembly, chromosome: 13.
OU342597.1:12780062-12780079
TTCAATGTAGCAATGCTACCAGCAAACTTG12780062GCACTTTGCTCATTGGTAGCGATTTGGGGCAAGTTATTTATTAATAAT
Tinea semifulvella genome assembly, chromosome: 20.
OU342604.1:9514647-9514664
TTCAACGTGCAAATTCTTCCAGTATTCTTT9514647GCACTTTGCTCATTGGTAGCGATTTGGAGCATTTTTTTATATTATTTT
Tinea semifulvella genome assembly, chromosome: 24.
OU342608.1:4932668-4932685
TTACACGTGGCAATGCTGCCAGTATCCTTG4932668GCACTTTGCTCATTGGTAGCGATTTGTTTATATATATATATATATATA
Tinea semifulvella genome assembly, chromosome: 26.
OU342610.1:2222942-2222959
TTCAACGTAGCAATGCTGCCAGTATCCTTG2222942GCACTTTGCTCATTGGTAGTGATTTGGAGTAAGTTTTTTTAAAGTAGT
Tinea semifulvella genome assembly, chromosome: 28.
OU342612.1:605074-605091
TTAGGCCAAAGGTTCAGCAGAACTTCCTTG605074GCACTTTGCTCATTGGTAGTGATTTGCAGCAAATTTATTTCTTTATAA
Tinea semifulvella genome assembly, chromosome: 40.
OU342624.1:4025342-4025359
CATTGCCATTCAACGTGGCCAGTATCCTTG4025342GCACTTTGCTCATTGGTAGCGTTTTGGAGCATTTTTTTGATTTATCAC
Tinea semifulvella genome assembly, chromosome: 43.
OU342627.1:3600503-3600520
AAGTTTTAAATAAATAAATAAATATCATTG3600503GCACTTTGCTCATTGGTAGTGATTTGGAACTGTGAACTCTTATTGGTT
Diabrotica balteata genome assembly, chromosome: 1.
OU898276.1:175381211-175381228
AAATAAGACGTTAATTAATTAATTTTTCGA175381211GCACTTTGCTCATTGGTATTGTAGGTATTGATAGGTATTGATAGGTAT
Volucella inflata genome assembly, chromosome: 1.
OV743716.1:72338292-72338309
TCGTCGTCTTTCAAGGGTTCTATCATTTGA72338292GCACTTTGCTCATTGGTAAATTTCGACAATTTGAAGCGTTTGGAATAA
Gibbula magus genome assembly, chromosome: 3.
OW388291.1:17856402-17856419
TTACTCATTGGATGTAAATAATAGCAAAAT17856402GCACTTTGCTCATTGGTAATTAGATTGTTTCTTGGAAAATTAGGAATA
Gibbula magus genome assembly, chromosome: 15.
OW388303.1:19448469-19448486
TTACTCATTGGATGTAAATAATAGCAAAAT19448469GCACTTTGCTCATTGGTAATTAGATTGTTTCTTGGAAAATTAGGAATA
Gibbula magus genome assembly, chromosome: 16.
OW388304.1:33484203-33484220
TTACTCATTGGATGTAAATAATAGCAAAAT33484203GCACTTTGCTCATTGGTAATTAGATTGTTTCTTGGAAAATTAGGAATA
Volucella bombylans genome assembly, chromosome: 2.
OX422141.1:175267568-175267585
AGACCATCATAAAAAGATGAGCAAGATTCG175267568GCACTTTGCTCATTGGTAGTTGCATCAACTTCAACCTTGAGTTGACAT
Sepiola atlantica genome assembly, chromosome: 1.
OY744515.1:3719787-3719804
TGTGCCCACTTTAAGTTGCAAGGGTATTGT3719787GCACTTTGCTCATTGGTAAATGTGTACAATGCATAAGCAGAAAATACC
Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB085J21, *** SEQUENCING IN PROGRESS ***, 4 unordered pieces.
AC232529.1:107689-107706
CTCTCAAATTTTTCACGGTTTGATGTGCTT107689TACCAATGAGCAAAGTGCTCAAATATATAATACTACCACTAGACAGCT
Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB085J21, *** SEQUENCING IN PROGRESS ***, 4 unordered pieces.
AC232529.1:121942-121959
CTCTCAAGTTTTTCACGGTTTGATGTGCTT121942TACCAATGAGCAAAGTGCTAAAATATATAACACTACCACTAGACAGCT
Brassica napus cultivar Xiang5A chromosome 3.
CP123878.1:24711530-24711547
CTCTCAAATTTTTCACGGTTTGATGTGCTT24711530TACCAATGAGCAAAGTGCTCAAATATATAACACTACCACTAGACAGCT
Brassica napus cultivar Xiang5A chromosome 3.
CP123878.1:24725788-24725805
CTCTCAAGTTTTTCACGGTTTGATGTGCTT24725788TACCAATGAGCAAAGTGCTAAAATATATAACACTACCACTAGACAGCT
Brassica rapa genome, scaffold: A03.
LR031572.1:24315947-24315964
CTCTCAAATTTTTCACGGTTTGATGTGCTT24315947TACCAATGAGCAAAGTGCTCAAATATATAACACTACCACTAGACAGCT
Brassica rapa genome, scaffold: A03.
LR031572.1:24356335-24356352
CTCTCAAGTTTTTCACGGTTTGATGTGCTT24356335TACCAATGAGCAAAGTGCTAAAATATATAACACTACCACTAGACAGCT
Brassica rapa genome assembly, chromosome: A03.
LS974619.2:24443821-24443838
CTCTCAAATTTTTCACGGTTTGATGTGCTT24443821TACCAATGAGCAAAGTGCTCAAATATATAACACTACCACTAGACAGCT
Brassica rapa genome assembly, chromosome: A03.
LS974619.2:24484211-24484228
CTCTCAAGTTTTTCACGGTTTGATGTGCTT24484211TACCAATGAGCAAAGTGCTAAAATATATAACACTACCACTAGACAGCT
Hygrocybe punicea genome assembly, chromosome: 11.
OY744471.1:2831118-2831135
CCCAGTTGTGATCTATAGTGCTCACACAAG2831118TACCAATGAGCAAAGTGCCTCTGACAATGAGAAGGTTGTCAGTCCAGA
Hygrocybe punicea genome assembly, chromosome: 11.
OY744471.1:2876860-2876877
CCCAGTTGTGATCTATAGTGCTCACACAAG2876860TACCAATGAGCAAAGTGCCTCTGACAATGAGAAGGTTGTCAGTCCAGA
Vaccinium vitis-idaea genome assembly, chromosome: 11.
OY978225.1:13563502-13563519
CATGCAATTCTTTATCCAAAGTCAAACGGT13563502TACCAATGAGCAAAGTGCTCATGTGTTGAAAGAGATCCAAGGTCAACT
Tinea semifulvella genome assembly, chromosome: 3.
OU342587.1:16559755-16559772
TCAAAAATATTATCTATTGCTCCAAATCGC16559755TACCAATGAGCAAAGTGCCATGGATACTGGCTACATTGCCATGTTGAA
Tinea semifulvella genome assembly, chromosome: 5.
OU342589.1:8181188-8181205
GGTTTTGTACAATAAAGAATTTATTATTAT8181188TACCAATGAGCAAAGTGCCAAGGATACTAACACCATTGCCATTTAACA
Tinea semifulvella genome assembly, chromosome: 5.
OU342589.1:14586187-14586204
TATGTAAATAAAAAACTTGCTCTAAATTAC14586187TACCAATGAGCAAAGTGCCAAGGATGGCAGCAAAGCCATGTTAAATGG
Tinea semifulvella genome assembly, chromosome: 7.
OU342591.1:2256178-2256195
TATTAAAATAAAAAAAATGTTCCAATTTGC2256178TACCAATGAGCAAAGTGCTAAGGTTACTGGCAGCATTGCTACATTGAA
Tinea semifulvella genome assembly, chromosome: 7.
OU342591.1:3789865-3789882
TAAGTATAAAAAAAATAAACTCCAAATTAC3789865TACCAATGAGCAAAGTGCCAAGGATGATGGCAGCATTGCCGCGTTCAA
Tinea semifulvella genome assembly, chromosome: 13.
OU342597.1:2518896-2518913
TAAATAAATAAAAAACTTGCTCCAAATTGT2518896TACCAATGAGCAAAGTGCCTAGGATACTGGCAGCATTGCCGCGTTGAA
Tinea semifulvella genome assembly, chromosome: 14.
OU342598.1:3252526-3252543
AAAATAAACAAGAAAAATGCTCCAAATCGC3252526TACCAATGAGCAAAGTGCCAAGTATTCTGGCAGCATTACCACGTTAAA
Tinea semifulvella genome assembly, chromosome: 22.
OU342606.1:1038851-1038868
TGATGATGACTTTACTTTTTTTTTTTAAAC1038851TACCAATGAGCAAAGTGCTAAGGATACTGGCATTCAACGTTCTTAGTA
Tinea semifulvella genome assembly, chromosome: 22.
OU342606.1:1177551-1177568
ATTATAAATAAAAAACTTGCTCCAAATCGC1177551TACCAATGAGCAAAGTGCCAATGATACTGGCAGCATTGCCACGTTAAA
Tinea semifulvella genome assembly, chromosome: 33.
OU342617.1:6603847-6603864
AAAAAAAAAACCTCCAAATGTACTGAAGAG6603847TACCAATGAGCAAAGTGCCAAGGATACAGATAAAGTATTTATTAATAC
Tinea semifulvella genome assembly, chromosome: 33.
OU342617.1:10003533-10003550
TACTATAAATAAAAAAAAGCTCCAAATCGC10003533TACCAATGAGCAAAGTGCCAAGGATACTGGCAAATTGTCACGTTTTTT
Tinea semifulvella genome assembly, chromosome: 40.
OU342624.1:7739492-7739509
AAATATAAATAAAGAACTGCTCCAAATCAC7739492TACCAATGAGCAAAGTGCCAAGGATACTGGCAGCATTGCCGCGTTTAA
Tinea semifulvella genome assembly, chromosome: 42.
OU342626.1:3410617-3410634
AAATAAATAAATAAATATGCTCCAAATCGC3410617TACCAATGAGCAAAGTGCCAAGGATACTGGCAGCATTGCCACGTTGAA
Platycnemis pennipes genome assembly, chromosome: X.
OW121846.1:119079744-119079761
ATAAATTGTGTGAAAGCTACGCGTTTCTTT119079744TACCAATGAGCAAAGTGCGTTTATAAAATATATACTACCAATAATGAT
Drosophila immigrans genome assembly, chromosome: 2R.
OY757142.1:18049405-18049422
TTTGCTTTCGATTTAATTCACTTTTTCACT18049405TACCAATGAGCAAAGTGCTAGGCAAACGATCAAATACTTGAACATTGC
Drosophila immigrans genome assembly, chromosome: 2R.
OY757232.1:18062282-18062299
TTTGCTTTCGATTTAATTCACTTTTTCACT18062282TACCAATGAGCAAAGTGCTAGGCAAACGATCAAATACTTGAACATTGC

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/GCACTTTGCTCATTGGTA
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : GCACTTTGCTCATTGGTA | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.498 | 0.489 | search_plus_done; http://172.18.8.135:50400/match?q=GCACTTTGCTCATTGGTA&k=0&no_gap=0&offset=0&limit=50
0.817 | 0.319 | search_minus_done; http://172.18.8.135:50400/match?q=TACCAATGAGCAAAGTGC&k=0&no_gap=0&offset=0&limit=24
0.835 | 0.018 | cgi_end;

GGGenome by @meso_cacase at DBCLS
This page is licensed under a Creative Commons Attribution 4.0 International License (CC BY 4.0).